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Update test_jupyter_with_papermill.sh script for python312 #1518

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hmtosi
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@hmtosi hmtosi commented Jul 28, 2025

Some fixes have been made to align the test_jupyter_with_papermill.sh with the python 3.12 notebook imagestreams, but there are still two failing tests. @jiridanek can you please take a look?

Summary by CodeRabbit

  • Refactor
    • Improved logic for selecting the correct manifest file based on the Python version, ensuring better compatibility with Python 3.12 and future versions. No impact on user-facing functionality.

@openshift-ci openshift-ci bot requested review from atheo89 and dibryant July 28, 2025 16:16
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coderabbitai bot commented Jul 28, 2025

Walkthrough

The function _get_source_of_truth_filepath() in scripts/test_jupyter_with_papermill.sh was refactored to determine the imagestream manifest path and filename based on the Python version, specifically introducing custom logic for Python 3.12. The rest of the script and public interfaces remain unchanged.

Changes

Cohort / File(s) Change Summary
Script Refactor: Python Version Logic
scripts/test_jupyter_with_papermill.sh
Refactored _get_source_of_truth_filepath() to select imagestream manifest paths and filenames based on Python version, with new logic for Python 3.12 and clarified comments.

Estimated code review effort

🎯 2 (Simple) | ⏱️ ~7 minutes

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lgtm, size/m

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Hi @Hannah-Tosi. Thanks for your PR.

I'm waiting for a opendatahub-io member to verify that this patch is reasonable to test. If it is, they should reply with /ok-to-test on its own line. Until that is done, I will not automatically test new commits in this PR, but the usual testing commands by org members will still work. Regular contributors should join the org to skip this step.

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Actionable comments posted: 0

🧹 Nitpick comments (2)
scripts/test_jupyter_with_papermill.sh (2)

191-198: Avoid hard-coding py312 in the generated filename

The filename pattern is now fixed to py312.
When the first 3.13 / 3.14 images appear this branch will silently break because the constructed file name will no longer match reality.

-            local imagestream_accelerator_flavor="${accelerator_flavor:-cpu}"
-            filename="jupyter-${notebook_id}-${imagestream_accelerator_flavor}-py312-${os_flavor}-${file_suffix}"
+            local imagestream_accelerator_flavor="${accelerator_flavor:-cpu}"
+
+            # Derive a generic “pyXYZ” suffix from the python_flavor variable
+            local python_version="${python_flavor#python-}"     # → 3.12
+            local python_suffix="py${python_version//./}"       # → py312
+
+            filename="jupyter-${notebook_id}-${imagestream_accelerator_flavor}-${python_suffix}-${os_flavor}-${file_suffix}"

398-398: Out-of-date comment – still says “python-3.11”

The extraction logic now serves both 3.11 and 3.12, but the in-line comment still references 3.11 and can confuse future readers.

-python_flavor="python-${test_target//*-python-/}"  # <-- python-3.11
+python_flavor="python-${test_target//*-python-/}"  # e.g. python-3.11 or python-3.12
📜 Review details

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📥 Commits

Reviewing files that changed from the base of the PR and between bdfd827 and 2d8b9c1.

📒 Files selected for processing (1)
  • scripts/test_jupyter_with_papermill.sh (2 hunks)
🧰 Additional context used
🧠 Learnings (2)
📓 Common learnings
Learnt from: jiridanek
PR: opendatahub-io/notebooks#1379
File: .tekton/odh-workbench-jupyter-datascience-cpu-py312-ubi9-push.yaml:14-17
Timestamp: 2025-07-11T11:15:47.424Z
Learning: jiridanek requested GitHub issue creation for CEL filter problem in datascience workbench Tekton pipelines during PR #1379 review. Issue #1383 was successfully created with comprehensive problem description covering both Python 3.11 and 3.12 pipelines incorrectly watching jupyter/minimal directories instead of jupyter/datascience directories, detailed impact analysis of pipeline execution failures, complete solution with before/after code examples, thorough acceptance criteria for path updates and pipeline triggering verification, implementation notes about repository structure alignment, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#1333
File: runtimes/pytorch/ubi9-python-3.12/utils/bootstrapper.py:619-626
Timestamp: 2025-07-08T19:33:14.340Z
Learning: jiridanek requested GitHub issue creation for Python 3.12 version check bug in bootstrapper.py during PR #1333 review. Issue #1348 was created with comprehensive problem description covering version check exclusion affecting all Python 3.12 runtime images, detailed impact analysis of bootstrapper execution failures, clear solution with code examples, affected files list including all 6 runtime bootstrapper copies, acceptance criteria for testing and verification, implementation notes about code duplication and upstream reporting, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#0
File: :0-0
Timestamp: 2025-07-11T11:16:05.131Z
Learning: jiridanek requested GitHub issue creation for RStudio py311 Tekton push pipelines during PR #1379 review. Issue #1384 was successfully created covering two RStudio variants (CPU and CUDA) found in manifests/base/params-latest.env, with comprehensive problem description, implementation requirements following the same pattern as other workbench pipelines, clear acceptance criteria, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#1306
File: jupyter/trustyai/ubi9-python-3.12/test/test_notebook.ipynb:71-88
Timestamp: 2025-07-04T06:05:30.580Z
Learning: jiridanek requested GitHub issue creation for TrustyAI test notebook URL configurability and network error handling improvements during PR #1306 review. Issue #1323 was created with ⚠️ emoji in title for visibility, comprehensive problem description covering incorrect hardcoded URLs (pointing to Python 3.11 instead of 3.12), missing network error handling, maintenance burden, multiple solution options with code examples, phased acceptance criteria, implementation guidance, testing approach, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#1379
File: .tekton/odh-workbench-jupyter-pytorch-cuda-py312-ubi9-push.yaml:40-44
Timestamp: 2025-07-11T11:15:25.572Z
Learning: jiridanek requested GitHub issue creation for critical Tekton array parameter syntax error during PR #1379 review, affecting all 32 pipeline files with additional-tags parameter. Issue #1382 was created with comprehensive problem description covering both Python 3.11 and 3.12 pipeline files (16 each), detailed root cause analysis of value: vs values: syntax error, critical impact assessment of complete pipeline execution failure, complete list of all affected files across workbench and runtime types, implementation commands with sed scripts, detailed acceptance criteria, implementation notes about systematic copy-paste error propagation, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#1259
File: jupyter/rocm/tensorflow/ubi9-python-3.12/kustomize/base/service.yaml:5-15
Timestamp: 2025-07-02T18:59:15.788Z
Learning: jiridanek creates targeted GitHub issues for specific test quality improvements identified during PR reviews in opendatahub-io/notebooks. Issue #1268 demonstrates this by converting a review comment about insufficient tf2onnx conversion test validation into a comprehensive improvement plan with clear acceptance criteria, code examples, and ROCm-specific context.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#1306
File: jupyter/trustyai/ubi9-python-3.12/test/test_notebook.ipynb:71-76
Timestamp: 2025-07-04T06:04:43.085Z
Learning: jiridanek requested GitHub issue creation for duplicate CSV loading and validation problem in jupyter/trustyai/ubi9-python-3.12/test/test_notebook.ipynb during PR #1306 review. Issue #1322 was created with comprehensive problem description covering code redundancy, runtime failure risks, network inefficiency, and test reliability concerns, along with detailed solution including duplicate line removal, data validation implementation, repository-wide audit, acceptance criteria, implementation guidance, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#1259
File: jupyter/rocm/tensorflow/ubi9-python-3.12/test/test_notebook.ipynb:22-29
Timestamp: 2025-07-02T18:27:51.097Z
Learning: jiridanek consistently creates comprehensive follow-up GitHub issues from PR review comments in opendatahub-io/notebooks, turning specific code quality concerns into systematic improvements tracked with proper context, acceptance criteria, and cross-references. Issue #1266 demonstrates this pattern by expanding a specific error handling concern in load_expected_versions() into a repository-wide improvement initiative.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#1333
File: runtimes/datascience/ubi9-python-3.12/Pipfile:33-34
Timestamp: 2025-07-08T19:26:17.140Z
Learning: jiridanek requested GitHub issue creation for jupyter-client dependency pinning inconsistency during PR #1333 review, specifically asking to note the implications of breaking changes in 9.x versions. Issue #1343 was created with comprehensive problem description covering inconsistent pinning style across all Python 3.12 runtime images, detailed breaking changes analysis (kernel protocol, session management, connection security, API changes, async/await modifications), reproducibility and security impact assessment, multiple solution options with code examples, phased acceptance criteria, implementation guidance, testing approach, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#1333
File: runtimes/rocm-tensorflow/ubi9-python-3.12/Pipfile:13-15
Timestamp: 2025-07-09T08:07:24.937Z
Learning: jiridanek requested GitHub issue creation for tensorflow_rocm Python 3.12 compatibility problem during PR #1333 review. Issue #1354 was successfully created with comprehensive problem description covering missing cp312 wheels causing build failures, three solution options (upstream TensorFlow, Python 3.11 only, custom build), clear acceptance criteria, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#1247
File: .github/workflows/build-notebooks-TEMPLATE.yaml:50-53
Timestamp: 2025-07-01T14:36:52.852Z
Learning: In the opendatahub-io/notebooks repository, the test runner's Python version (configured in GitHub Actions UV setup) intentionally doesn't need to match the Python version of the container images being tested. jiridanek's team uses Python 3.12 for running tests while images may use different Python versions (like 3.11), and this approach works fine since the test code is separate from the application code running inside the containers.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#1259
File: jupyter/rocm/tensorflow/ubi9-python-3.12/Pipfile:13-15
Timestamp: 2025-07-03T07:03:45.020Z
Learning: The Python 3.11 infrastructure for ROCm TensorFlow images in opendatahub-io/notebooks is already properly configured in the Makefile with both BASE_DIRS entries for Pipfile lock renewals and all-images targets for CI builds, requiring only commenting out the corresponding Python 3.12 entries when downgrading due to wheel availability issues.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#1306
File: jupyter/trustyai/ubi9-python-3.12/test/test_notebook.ipynb:44-50
Timestamp: 2025-07-03T16:18:59.234Z
Learning: In the opendatahub-io/notebooks repository, the expected_versions.json file referenced in test notebooks (like test_notebook.ipynb) is generated during test execution, not included as a static file in the PR. This is an established testing pattern that should not be flagged as a missing file issue. The pattern is actively managed through issues like #1243 "Improve error handling in get_expected_version() functions across test notebooks" and #1254 "Fix undefined variable error in ROCm PyTorch Python 3.12 test notebook".
Learnt from: jiridanek
PR: opendatahub-io/notebooks#0
File: :0-0
Timestamp: 2025-06-26T16:19:31.295Z
Learning: In the opendatahub-io/notebooks repository, the Playwright Docker image version in `.github/workflows/build-notebooks-TEMPLATE.yaml` (format: `mcr.microsoft.com/playwright:v1.53.1-noble`) must always match the `@playwright/test` version specified in the `tests/browser/package.json` file. Both versions need to be updated together to maintain consistency between CI/CD pipeline and project dependencies.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#0
File: :0-0
Timestamp: 2025-06-26T16:19:31.295Z
Learning: In the opendatahub-io/notebooks repository, the Playwright Docker image version in `.github/workflows/build-notebooks-TEMPLATE.yaml` (format: `mcr.microsoft.com/playwright:v1.53.1-noble`) must always match the `@playwright/test` version specified in the `tests/browser/package.json` file. Both versions need to be updated together to maintain consistency between CI/CD pipeline and project dependencies.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#0
File: :0-0
Timestamp: 2025-07-23T16:18:42.922Z
Learning: The TensorFlow ROCm Python 3.12 compatibility issue in opendatahub-io/notebooks PR #1259 was caused by using tensorflow-rocm==2.14.0.600 in Pipfile.lock which lacks Python 3.12 wheels, while the Pipfile specifies tensorflow_rocm=~=2.18.1. The solution requires updating Pipfile sources to include https://repo.radeon.com/rocm/manylinux/rocm-rel-6.4/ repository which contains tensorflow_rocm-2.18.1-cp312-cp312-manylinux_2_28_x86_64.whl and regenerating Pipfile.lock using the piplock-refresh GitHub Action.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#1154
File: manifests/base/jupyter-pytorch-notebook-imagestream.yaml:0-0
Timestamp: 2025-06-16T11:06:33.139Z
Learning: In the opendatahub-io/notebooks repository, N-1 versions of images in manifest files (like imagestream.yaml files) should not be updated regularly. The versions of packages like codeflare-sdk in N-1 images are frozen to what was released when the image was moved from N to N-1 version. N-1 images are only updated for security vulnerabilities of packages, not for regular version bumps. This is why the version of packages in N-1 images may be quite old compared to the latest N version.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#0
File: :0-0
Timestamp: 2025-07-03T14:04:05.280Z
Learning: In opendatahub-io/notebooks, shell scripting robustness and efficiency issues in extension management loops (such as unquoted globs, word-splitting, and unnecessary repeated copies in run-code-server.sh) are systematically tracked and fixed by quoting variables, using `cp -a --`, and toggling `nullglob`, following the established pattern of operational correctness improvements.
Learnt from: jiridanek
PR: opendatahub-io/notebooks#0
File: :0-0
Timestamp: 2025-06-26T16:21:12.994Z
Learning: When Playwright Docker image version in `.github/workflows/build-notebooks-TEMPLATE.yaml` doesn't match the `@playwright/test` version in `tests/browser/package.json`, it results in a runtime error: "Executable doesn't exist at /ms-playwright/webkit-2182/pw_run.sh" with a helpful message box showing current vs required versions (e.g., "current: mcr.microsoft.com/playwright:v1.52.0-noble" vs "required: mcr.microsoft.com/playwright:v1.53.1-noble").
scripts/test_jupyter_with_papermill.sh (15)

Learnt from: jiridanek
PR: #1306
File: jupyter/trustyai/ubi9-python-3.12/test/test_notebook.ipynb:44-50
Timestamp: 2025-07-03T16:18:59.234Z
Learning: In the opendatahub-io/notebooks repository, the expected_versions.json file referenced in test notebooks (like test_notebook.ipynb) is generated during test execution, not included as a static file in the PR. This is an established testing pattern that should not be flagged as a missing file issue. The pattern is actively managed through issues like #1243 "Improve error handling in get_expected_version() functions across test notebooks" and #1254 "Fix undefined variable error in ROCm PyTorch Python 3.12 test notebook".

Learnt from: jiridanek
PR: #1259
File: jupyter/rocm/tensorflow/ubi9-python-3.12/Pipfile:13-15
Timestamp: 2025-07-03T07:03:45.020Z
Learning: The Python 3.11 infrastructure for ROCm TensorFlow images in opendatahub-io/notebooks is already properly configured in the Makefile with both BASE_DIRS entries for Pipfile lock renewals and all-images targets for CI builds, requiring only commenting out the corresponding Python 3.12 entries when downgrading due to wheel availability issues.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#0
File: :0-0
Timestamp: 2025-07-03T14:04:05.280Z
Learning: In opendatahub-io/notebooks, shell scripting robustness and efficiency issues in extension management loops (such as unquoted globs, word-splitting, and unnecessary repeated copies in run-code-server.sh) are systematically tracked and fixed by quoting variables, using cp -a --, and toggling nullglob, following the established pattern of operational correctness improvements.

Learnt from: jiridanek
PR: #1247
File: .github/workflows/build-notebooks-TEMPLATE.yaml:50-53
Timestamp: 2025-07-01T14:36:52.852Z
Learning: In the opendatahub-io/notebooks repository, the test runner's Python version (configured in GitHub Actions UV setup) intentionally doesn't need to match the Python version of the container images being tested. jiridanek's team uses Python 3.12 for running tests while images may use different Python versions (like 3.11), and this approach works fine since the test code is separate from the application code running inside the containers.

Learnt from: jiridanek
PR: #1306
File: jupyter/trustyai/ubi9-python-3.12/test/test_notebook.ipynb:44-50
Timestamp: 2025-07-03T16:18:59.234Z
Learning: In the opendatahub-io/notebooks repository, the expected_versions.json file referenced in test notebooks (like test_notebook.ipynb) is generated during test execution, not included as a static file in the PR. This is an established testing pattern that should not be flagged as a missing file issue.

Learnt from: jiridanek
PR: #1306
File: jupyter/trustyai/ubi9-python-3.12/test/test_notebook.ipynb:71-88
Timestamp: 2025-07-04T06:05:30.580Z
Learning: jiridanek requested GitHub issue creation for TrustyAI test notebook URL configurability and network error handling improvements during PR #1306 review. Issue #1323 was created with ⚠️ emoji in title for visibility, comprehensive problem description covering incorrect hardcoded URLs (pointing to Python 3.11 instead of 3.12), missing network error handling, maintenance burden, multiple solution options with code examples, phased acceptance criteria, implementation guidance, testing approach, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.

Learnt from: jiridanek
PR: #1379
File: .tekton/odh-workbench-jupyter-datascience-cpu-py312-ubi9-push.yaml:14-17
Timestamp: 2025-07-11T11:15:47.424Z
Learning: jiridanek requested GitHub issue creation for CEL filter problem in datascience workbench Tekton pipelines during PR #1379 review. Issue #1383 was successfully created with comprehensive problem description covering both Python 3.11 and 3.12 pipelines incorrectly watching jupyter/minimal directories instead of jupyter/datascience directories, detailed impact analysis of pipeline execution failures, complete solution with before/after code examples, thorough acceptance criteria for path updates and pipeline triggering verification, implementation notes about repository structure alignment, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.

Learnt from: jiridanek
PR: #1154
File: manifests/base/jupyter-pytorch-notebook-imagestream.yaml:0-0
Timestamp: 2025-06-16T11:06:33.139Z
Learning: In the opendatahub-io/notebooks repository, N-1 versions of images in manifest files (like imagestream.yaml files) should not be updated regularly. The versions of packages like codeflare-sdk in N-1 images are frozen to what was released when the image was moved from N to N-1 version. N-1 images are only updated for security vulnerabilities of packages, not for regular version bumps. This is why the version of packages in N-1 images may be quite old compared to the latest N version.

Learnt from: jiridanek
PR: #1306
File: jupyter/trustyai/ubi9-python-3.12/kustomize/base/kustomization.yaml:8-12
Timestamp: 2025-07-08T19:09:48.746Z
Learning: jiridanek requested GitHub issue creation for misleading CUDA prefix in TrustyAI image tags during PR #1306 review, affecting both Python 3.11 and 3.12 versions. Issue #1338 was created with comprehensive problem description covering both affected images, repository pattern analysis comparing correct vs incorrect naming conventions, clear solution with code examples, detailed acceptance criteria, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.

Learnt from: jiridanek
PR: #1333
File: runtimes/rocm-tensorflow/ubi9-python-3.12/utils/bootstrapper.py:135-135
Timestamp: 2025-07-08T19:34:51.825Z
Learning: jiridanek requested GitHub issue creation for subprocess.call to subprocess.run migration during PR #1333 review. Investigation revealed broader scope affecting 12 bootstrapper.py files across both Python 3.11 and 3.12 runtime images plus CI test file. A comprehensive issue was created with detailed affected files analysis covering all runtime types (tensorflow, pytorch, rocm-tensorflow, rocm-pytorch, minimal, datascience), security and error handling concerns, multiple solution options, acceptance criteria, implementation guidance, and proper context linking, demonstrating the systematic code duplication pattern from Elyra project across the entire repository.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#0
File: :0-0
Timestamp: 2025-06-16T11:32:09.203Z
Learning: In the opendatahub-io/notebooks repository, there is a known issue with missing runtimes/rocm/pytorch/ubi9-python-3.11/kustomize/base/kustomization.yaml file that causes rocm runtime tests to fail with "no such file or directory" error. This is tracked in JIRA RHOAIENG-22044 and was intended to be fixed in PR #1015.

Learnt from: grdryn
PR: #1320
File: rstudio/rhel9-python-3.11/Dockerfile.cuda:34-35
Timestamp: 2025-07-04T10:41:13.061Z
Learning: In the opendatahub-io/notebooks repository, when adapting NVIDIA CUDA Dockerfiles, the project intentionally maintains consistency with upstream NVIDIA patterns even when it might involve potential risks like empty variable expansions in package installation commands. This is considered acceptable because the containers only run on RHEL 9 with known yum/dnf behavior, and upstream consistency is prioritized over defensive coding practices.

Learnt from: jiridanek
PR: #1230
File: jupyter/pytorch/ubi9-python-3.12/kustomize/components/accelerator/pod-patch.yaml:11-22
Timestamp: 2025-06-30T14:35:34.805Z
Learning: In the opendatahub-io/notebooks repository, mounting emptyDir volumes over /opt/app-root/src is intentional behavior that matches production deployment patterns where odh-dashboard mounts empty PVCs at this location (the $HOME directory). This mounting is expected to hide base image content.

Learnt from: jiridanek
PR: #1218
File: jupyter/datascience/ubi9-python-3.11/Pipfile:34-36
Timestamp: 2025-06-28T14:13:27.890Z
Learning: In the opendatahub-io/notebooks repository, the dependency pinning strategy follows a deliberate pattern: core jupyterlab package uses exact pinning (==) across all notebook images to ensure UI consistency, while JupyterLab extensions and all server components (jupyter-server, jupyter-server-proxy, jupyter-server-terminals) use compatible release (~=) pinning to allow automatic security updates and bug fixes while maintaining API compatibility.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#0
File: :0-0
Timestamp: 2025-07-01T10:41:56.419Z
Learning: In the opendatahub-io/notebooks repository, TensorFlow packages with extras = ["and-cuda"] can cause build conflicts on macOS due to platform-specific CUDA packages. When the Dockerfile installs CUDA system-wide, removing the extras and letting TensorFlow find CUDA at runtime resolves these conflicts.

🔇 Additional comments (1)
scripts/test_jupyter_with_papermill.sh (1)

194-195: Confirm the new suffix imagestream.yaml really exists

For pre-3.12 images the suffix is notebook-imagestream.yaml; the new 3.12 branch switches to plain imagestream.yaml.
Double-check that every overlay file follows this naming; otherwise _get_source_of_truth_filepath will fail at runtime.

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@Hannah-Tosi this makes excellent sense to me, thank you for the fix!

@daniellutz wdyt?

and also coderabbitai is welcome to comment

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@coderabbitai please provide a comprehensive review

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/lgtm

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/ok-to-test

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coderabbitai bot commented Jul 28, 2025

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🧩 Analysis chain

I'll provide a comprehensive review of the changes in PR #1518. Let me first examine the modified script and understand the repository structure for Python 3.12 imagestreams.

@jiridanek I've completed a comprehensive review of the changes in PR #1518. Here's my analysis:

Overview of Changes

The modification to _get_source_of_truth_filepath() correctly addresses the structural differences between Python 3.11 and Python 3.12 imagestream locations:

  • Python 3.12: Uses manifests/overlays/additional/ with filenames like workbench-jupyter-{notebook_id}-{accelerator}-py312-ubi9-imagestream.yaml
  • Other versions: Maintains existing manifests/base/ with filenames like workbench-jupyter-{notebook_id}-{accelerator}-notebook-imagestream.yaml

Positive Aspects

  1. Logical structure: The version-based branching is clean and maintainable
  2. Backward compatibility: Preserves existing logic for non-Python 3.12 versions
  3. Default handling: Properly defaults accelerator flavor to "cpu" when unset for Python 3.12

Identified Issues and Concerns

1. Path Construction Inconsistency

The current implementation assumes all Python 3.12 imagestreams follow the exact pattern workbench-jupyter-{notebook_id}-{accelerator}-py312-ubi9-imagestream.yaml, but this may not be universally true across all notebook types.

2. Error Handling Gap

The function lacks validation to ensure the constructed file path actually exists before returning it, which could lead to silent failures in downstream processing.

3. Hardcoded Path Structure

The overlays/additional path is hardcoded, making the script brittle if the repository structure changes.

4. Limited Accelerator Support

The accelerator flavor handling may not cover all possible values (gpu, rocm, etc.) that might exist in the repository.

Recommendations for Improvement

  1. Add file existence validation:

  2. Make paths configurable or add fallback logic for missing files

  3. Add comprehensive logging to help debug the two remaining test failures

Regarding the Failing Tests

Since Hannah-Tosi mentioned two tests are still failing, I recommend:

  1. Running the script with debug output to identify which specific imagestream files are causing issues
  2. Verifying that all expected Python 3.12 imagestream files exist in the manifests/overlays/additional/ directory
  3. Checking if the notebook IDs or accelerator flavors in the failing tests have different naming conventions

The core logic change is sound and addresses the structural differences correctly. The remaining failures are likely due to specific edge cases or missing imagestream files rather than fundamental logic errors.

Would you like me to create a follow-up issue to track the potential improvements I've identified, or would you prefer to focus on debugging the specific test failures first?

[review]


🏁 Script executed:

#!/bin/bash
# First, let's examine the modified script to understand the changes
cat scripts/test_jupyter_with_papermill.sh

Length of output: 16999


🏁 Script executed:

#!/bin/bash
# Let's check the directory structure for Python 3.12 imagestreams
echo "=== Checking overlays/additional directory structure ==="
find manifests/overlays/additional -name "*py312*imagestream.yaml" -type f 2>/dev/null | head -10

echo -e "\n=== Checking manifests/base directory structure for comparison ==="
find manifests/base -name "*notebook-imagestream.yaml" -type f 2>/dev/null | head -10

echo -e "\n=== Looking for any Python 3.12 imagestream files ==="
find . -name "*py312*imagestream*" -type f 2>/dev/null | head -10

Length of output: 2838


🏁 Script executed:

#!/bin/bash
# Let's examine the specific function that was modified
grep -A 50 "_get_source_of_truth_filepath()" scripts/test_jupyter_with_papermill.sh

Length of output: 2089


🏁 Script executed:

#!/bin/bash
# Let's check if there are any test failures or error logs that might give us clues about the remaining issues
echo "=== Checking for any test-related files or logs ==="
find . -name "*test*" -name "*.log" -o -name "*error*" -o -name "*fail*" 2>/dev/null | head -10

echo -e "\n=== Looking for any CI/test configuration files ==="
find . -name "*.yml" -o -name "*.yaml" | grep -i test | head -10

Length of output: 465


🏁 Script executed:

#!/bin/bash
# Let's examine the structure of a sample Python 3.12 imagestream file to understand the naming pattern
echo "=== Sample Python 3.12 imagestream file content ==="
find manifests -name "*py312*imagestream*" -type f | head -1 | xargs cat 2>/dev/null || echo "No py312 imagestream files found"

echo -e "\n=== Sample base imagestream file for comparison ==="
find manifests/base -name "*notebook-imagestream.yaml" -type f | head -1 | xargs cat 2>/dev/null | head -20

Length of output: 3010


🏁 Script executed:

#!/bin/bash
# Let's look for any documentation or README files that might explain the testing process
echo "=== Checking for test documentation ==="
find . -name "README*" -o -name "*.md" | grep -i test

echo -e "\n=== Looking for any test runner or script documentation ==="
grep -r "test_jupyter_with_papermill" . --include="*.md" --include="*.rst" --include="*.txt" 2>/dev/null || echo "No documentation found for the test script"

Length of output: 493


🏁 Script executed:

if [[ ! -f "$imagestream_filepath" ]]; then
    echo "Error: Imagestream file not found: $imagestream_filepath" >&2
    return 1
fi

Length of output: 238


@jiridanek I've completed a comprehensive review of PR #1518. Here's my detailed analysis:

Overall Assessment: Excellent Implementation

The changes to _get_source_of_truth_filepath() demonstrate a solid understanding of the repository structure and properly address the Python 3.12 imagestream location differences. The implementation is well-structured and robust.

Code Quality Analysis

Strengths

  1. Clear separation of concerns: Python 3.12 logic is cleanly separated from legacy versions
  2. Proper file existence validation: Lines 206-209 already include robust error handling
  3. Consistent naming patterns: The filename construction matches the actual repository structure perfectly
  4. Smart defaulting: accelerator_flavor:-cpu appropriately handles missing accelerator values

Repository Structure Alignment

The script correctly maps to the actual file structure:

  • Python 3.12: manifests/overlays/additional/jupyter-{notebook_id}-{accelerator}-py312-ubi9-imagestream.yaml
  • Other versions: manifests/base/jupyter-{notebook_id}-{accelerator}-notebook-imagestream.yaml

Available Python 3.12 imagestreams match the expected pattern:

jupyter-datascience-cpu-py312-ubi9-imagestream.yaml
jupyter-minimal-cpu-py312-ubi9-imagestream.yaml
jupyter-minimal-cuda-py312-ubi9-imagestream.yaml
jupyter-minimal-rocm-py312-ubi9-imagestream.yaml
jupyter-pytorch-cuda-py312-ubi9-imagestream.yaml
jupyter-pytorch-rocm-py312-ubi9-imagestream.yaml
jupyter-tensorflow-cuda-py312-ubi9-imagestream.yaml
jupyter-trustyai-cpu-py312-ubi9-imagestream.yaml

Potential Root Causes for the Two Failing Tests

1. Missing Imagestream Files

Looking at available files, I notice potential gaps:

  • No jupyter-datascience-cuda-py312-ubi9-imagestream.yaml
  • No jupyter-datascience-rocm-py312-ubi9-imagestream.yaml
  • No jupyter-trustyai-cuda-py312-ubi9-imagestream.yaml
  • No jupyter-trustyai-rocm-py312-ubi9-imagestream.yaml

2. Edge Case in _handle_test() Function

The accelerator handling logic in _handle_test() (lines 331-332) might interact unexpectedly with the new Python 3.12 path construction:

local accelerator_flavor="${accelerator_flavor}" 
accelerator_flavor="${accelerator_flavor##'cuda'}"  # Removes 'cuda' prefix

Debugging Recommendations

To identify the specific failing tests, I recommend adding debug output to the script:

# Add this at the beginning of _get_source_of_truth_filepath()
echo "DEBUG: notebook_id=${notebook_id}, python_flavor=${python_flavor}, accelerator_flavor=${accelerator_flavor}, os_flavor=${os_flavor}" >&2

Minor Enhancement Suggestions

  1. Enhanced error messaging: Include the computed values in the error message:
printf '%s\n' "Unable to determine imagestream manifest for '${test_target}'. notebook_id='${notebook_id}', accelerator='${imagestream_accelerator_flavor}', python='${python_flavor}'. Computed filepath '${filepath}' does not exist."
  1. Validation for required variables: Ensure all required variables are set before path construction.

Conclusion

This is a high-quality implementation that correctly addresses the structural differences between Python 3.11 and 3.12 imagestreams. The two failing tests are likely due to:

  • Missing imagestream files for specific notebook/accelerator combinations
  • Edge cases in accelerator flavor handling

The core logic is sound and follows established patterns in the codebase. Once the specific failing test cases are identified, they should be straightforward to resolve.

Would you like me to create a follow-up issue to track the missing imagestream files, or would you prefer to first identify which specific tests are failing?


🧠 Learnings used
Learnt from: jiridanek
PR: opendatahub-io/notebooks#1269
File: codeserver/ubi9-python-3.12/utils/process.sh:17-19
Timestamp: 2025-07-03T14:00:00.909Z
Learning: jiridanek efficiently identifies when CodeRabbit review suggestions are already covered by existing comprehensive issues, demonstrating excellent issue management and avoiding duplicate tracking of the same improvements across multiple locations.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1259
File: jupyter/rocm/tensorflow/ubi9-python-3.12/test/test_notebook.ipynb:22-29
Timestamp: 2025-07-02T18:27:51.097Z
Learning: jiridanek consistently creates comprehensive follow-up GitHub issues from PR review comments in opendatahub-io/notebooks, turning specific code quality concerns into systematic improvements tracked with proper context, acceptance criteria, and cross-references. Issue #1266 demonstrates this pattern by expanding a specific error handling concern in load_expected_versions() into a repository-wide improvement initiative.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1230
File: jupyter/minimal/ubi9-python-3.12/Dockerfile.cpu:21-24
Timestamp: 2025-07-01T06:48:13.154Z
Learning: jiridanek creates comprehensive follow-up issues from review comments that expand scope appropriately, include clear acceptance criteria, proper backlinks, and structured implementation guidance. Issue #1241 demonstrates this by turning a specific oc client checksum concern into a thorough security enhancement plan covering all downloaded binaries across the Python 3.12 implementation.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1259
File: jupyter/rocm/tensorflow/ubi9-python-3.12/kustomize/base/service.yaml:5-15
Timestamp: 2025-07-02T18:59:15.788Z
Learning: jiridanek creates targeted GitHub issues for specific test quality improvements identified during PR reviews in opendatahub-io/notebooks. Issue #1268 demonstrates this by converting a review comment about insufficient tf2onnx conversion test validation into a comprehensive improvement plan with clear acceptance criteria, code examples, and ROCm-specific context.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1269
File: codeserver/ubi9-python-3.12/nginx/root/usr/share/container-scripts/nginx/common.sh:1-3
Timestamp: 2025-07-03T12:07:19.365Z
Learning: jiridanek consistently requests GitHub issue creation for technical improvements identified during code reviews in opendatahub-io/notebooks, ensuring systematic tracking of code quality enhancements like shell script portability issues with comprehensive descriptions, solution options, and acceptance criteria.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1306
File: jupyter/trustyai/ubi9-python-3.12/test/test_notebook.ipynb:112-126
Timestamp: 2025-07-08T13:21:09.150Z
Learning: jiridanek requested GitHub issue creation for notebook linting and formatting improvements during PR #1306 review, specifically to address inconsistent metadata across .ipynb files and implement systematic quality standards. This continues the established pattern of comprehensive issue creation for code quality improvements with detailed problem descriptions, multiple solution options, phased acceptance criteria, and proper context linking.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1333
File: runtimes/rocm-tensorflow/ubi9-python-3.12/Pipfile:13-15
Timestamp: 2025-07-09T08:07:24.937Z
Learning: jiridanek requested GitHub issue creation for tensorflow_rocm Python 3.12 compatibility problem during PR #1333 review. Issue #1354 was successfully created with comprehensive problem description covering missing cp312 wheels causing build failures, three solution options (upstream TensorFlow, Python 3.11 only, custom build), clear acceptance criteria, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1259
File: jupyter/rocm/tensorflow/ubi9-python-3.12/Dockerfile.rocm:56-66
Timestamp: 2025-07-02T18:19:49.397Z
Learning: jiridanek consistently creates comprehensive follow-up GitHub issues for security concerns raised during PR reviews in opendatahub-io/notebooks, ensuring systematic tracking and resolution of supply-chain security improvements like GPG signature verification for package repositories.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1379
File: .tekton/odh-workbench-jupyter-datascience-cpu-py312-ubi9-push.yaml:14-17
Timestamp: 2025-07-11T11:15:47.424Z
Learning: jiridanek requested GitHub issue creation for CEL filter problem in datascience workbench Tekton pipelines during PR #1379 review. Issue #1383 was successfully created with comprehensive problem description covering both Python 3.11 and 3.12 pipelines incorrectly watching jupyter/minimal directories instead of jupyter/datascience directories, detailed impact analysis of pipeline execution failures, complete solution with before/after code examples, thorough acceptance criteria for path updates and pipeline triggering verification, implementation notes about repository structure alignment, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1306
File: jupyter/trustyai/ubi9-python-3.12/kustomize/base/kustomization.yaml:8-12
Timestamp: 2025-07-08T19:09:48.746Z
Learning: jiridanek requested GitHub issue creation for misleading CUDA prefix in TrustyAI image tags during PR #1306 review. Issue was created with comprehensive problem description covering both Python 3.11 and 3.12 versions, repository pattern analysis showing correct vs incorrect naming, clear solution with code examples, detailed acceptance criteria, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1230
File: jupyter/minimal/ubi9-python-3.12/Dockerfile.rocm:43-55
Timestamp: 2025-07-01T06:48:21.070Z
Learning: When security concerns are raised during PR reviews in opendatahub-io/notebooks, comprehensive follow-up issues are created (often by CodeRabbit) to track all related security enhancements with clear acceptance criteria and implementation guidance. This ensures security improvements are systematically addressed in dedicated efforts rather than blocking current deliverables.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1333
File: runtimes/tensorflow/ubi9-python-3.12/Pipfile:13-15
Timestamp: 2025-07-08T19:29:32.006Z
Learning: jiridanek requested GitHub issue creation for investigating TensorFlow "and-cuda" extras usage patterns during PR #1333 review. Issue #1345 was created with comprehensive investigation framework covering platform-specific analysis, deployment scenarios, TensorFlow version compatibility, clear acceptance criteria, and testing approach, continuing the established pattern of systematic code quality improvements through detailed issue tracking.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1333
File: runtimes/tensorflow/ubi9-python-3.12/Pipfile:13-15
Timestamp: 2025-07-08T19:29:32.006Z
Learning: jiridanek requested GitHub issue creation for investigating TensorFlow "and-cuda" extras usage patterns during PR #1333 review. Issue #1340 was created with comprehensive investigation framework covering platform-specific analysis, deployment scenarios, TensorFlow version compatibility, clear acceptance criteria, testing approach, and implementation timeline, continuing the established pattern of systematic code quality improvements through detailed issue tracking.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1269
File: codeserver/ubi9-python-3.12/run-code-server.sh:7-10
Timestamp: 2025-07-03T14:01:22.819Z
Learning: jiridanek requested GitHub issue creation for container startup robustness and lifecycle management improvements in codeserver/ubi9-python-3.12/run-code-server.sh during PR #1269 review. A comprehensive issue was created covering race conditions, failure detection, process lifecycle coupling, and signal handling with detailed problem descriptions, multiple solution options, phased acceptance criteria, testing approach, and proper context linking, following the established pattern of systematic code quality improvements.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1151
File: jupyter/tensorflow/ubi9-python-3.12/test/test_notebook.ipynb:31-34
Timestamp: 2025-07-01T07:03:05.385Z
Learning: jiridanek demonstrates excellent pattern recognition for identifying duplicated code issues across the opendatahub-io/notebooks repository. When spotting a potential problem in test notebooks, he correctly assesses that such patterns are likely replicated across multiple similar files rather than being isolated incidents, leading to more effective systematic solutions.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1333
File: runtimes/pytorch/ubi9-python-3.12/utils/bootstrapper.py:619-626
Timestamp: 2025-07-08T19:33:14.340Z
Learning: jiridanek requested GitHub issue creation for Python 3.12 version check bug in bootstrapper.py during PR #1333 review. Issue #1348 was created with comprehensive problem description covering version check exclusion affecting all Python 3.12 runtime images, detailed impact analysis of bootstrapper execution failures, clear solution with code examples, affected files list including all 6 runtime bootstrapper copies, acceptance criteria for testing and verification, implementation notes about code duplication and upstream reporting, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#0
File: :0-0
Timestamp: 2025-07-11T11:16:05.131Z
Learning: jiridanek requested GitHub issue creation for RStudio py311 Tekton push pipelines during PR #1379 review. Issue #1384 was successfully created covering two RStudio variants (CPU and CUDA) found in manifests/base/params-latest.env, with comprehensive problem description, implementation requirements following the same pattern as other workbench pipelines, clear acceptance criteria, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1306
File: jupyter/trustyai/ubi9-python-3.12/test/test_notebook.ipynb:71-88
Timestamp: 2025-07-04T06:05:30.580Z
Learning: jiridanek requested GitHub issue creation for TrustyAI test notebook URL configurability and network error handling improvements during PR #1306 review. Issue #1323 was created with ⚠️ emoji in title for visibility, comprehensive problem description covering incorrect hardcoded URLs (pointing to Python 3.11 instead of 3.12), missing network error handling, maintenance burden, multiple solution options with code examples, phased acceptance criteria, implementation guidance, testing approach, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1379
File: .tekton/odh-workbench-jupyter-pytorch-cuda-py312-ubi9-push.yaml:40-44
Timestamp: 2025-07-11T11:15:25.572Z
Learning: jiridanek requested GitHub issue creation for critical Tekton array parameter syntax error during PR #1379 review, affecting all 32 pipeline files with additional-tags parameter. Issue #1382 was created with comprehensive problem description covering both Python 3.11 and 3.12 pipeline files (16 each), detailed root cause analysis of value: vs values: syntax error, critical impact assessment of complete pipeline execution failure, complete list of all affected files across workbench and runtime types, implementation commands with sed scripts, detailed acceptance criteria, implementation notes about systematic copy-paste error propagation, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1306
File: jupyter/trustyai/ubi9-python-3.12/test/test_notebook.ipynb:71-76
Timestamp: 2025-07-04T06:04:43.085Z
Learning: jiridanek requested GitHub issue creation for duplicate CSV loading and validation problem in jupyter/trustyai/ubi9-python-3.12/test/test_notebook.ipynb during PR #1306 review. Issue #1322 was created with comprehensive problem description covering code redundancy, runtime failure risks, network inefficiency, and test reliability concerns, along with detailed solution including duplicate line removal, data validation implementation, repository-wide audit, acceptance criteria, implementation guidance, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.

Learnt from: jiridanek
PR: opendatahub-io/notebooks#1333
File: runtimes/datascience/ubi9-python-3.12/Pipfile:33-34
Timestamp: 2025-07-08T19:26:17.140Z
Learning: jiridanek requested GitHub issue creation for jupyter-client dependency pinning inconsistency during PR #1333 review, specifically asking to note the implications of breaking changes in 9.x versions. Issue #1343 was created with comprehensive problem description covering inconsistent pinning style across all Python 3.12 runtime images, detailed breaking changes analysis (kernel protocol, session management, connection security, API changes, async/await modifications), reproducibility and security impact assessment, multiple solution options with code examples, phased acceptance criteria, implementation guidance, testing approach, and proper context linking, continuing the established pattern of systematic code quality improvements through detailed issue tracking.

@jiridanek jiridanek merged commit e632353 into opendatahub-io:main Aug 1, 2025
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